non-negative matrix factorization nnmf function Search Results


calcium image processing toolbox caiman matlab  (MathWorks Inc)
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MathWorks Inc calcium image processing toolbox caiman matlab
Calcium Image Processing Toolbox Caiman Matlab, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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non-negative matrix factorization (nmf)  (Eli Lilly)
90
Eli Lilly non-negative matrix factorization (nmf)
Comparison of pipelines analysis steps
Non Negative Matrix Factorization (Nmf), supplied by Eli Lilly, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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non-negative matrix factorization topic modeling  (Reddit Inc)
90
Reddit Inc non-negative matrix factorization topic modeling
Comparison of pipelines analysis steps
Non Negative Matrix Factorization Topic Modeling, supplied by Reddit Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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constrained non-negative matrix factorization for microendoscopic data (cnmf-e)  (Inscopix Inc)
90
Inscopix Inc constrained non-negative matrix factorization for microendoscopic data (cnmf-e)
Comparison of pipelines analysis steps
Constrained Non Negative Matrix Factorization For Microendoscopic Data (Cnmf E), supplied by Inscopix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pharmaceutical polymorph identification and multicomponent particle mapping with non-negative matrix factorization  (National Institute of Standards and Technology)
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National Institute of Standards and Technology pharmaceutical polymorph identification and multicomponent particle mapping with non-negative matrix factorization
Comparison of pipelines analysis steps
Pharmaceutical Polymorph Identification And Multicomponent Particle Mapping With Non Negative Matrix Factorization, supplied by National Institute of Standards and Technology, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nmf  (Novartis)
90
Novartis nmf
(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization <t>(NMF)</t> using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.
Nmf, supplied by Novartis, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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constrained non-negative matrix factorization (cnmf-e) pipeline  (Inscopix Inc)
90
Inscopix Inc constrained non-negative matrix factorization (cnmf-e) pipeline
(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization <t>(NMF)</t> using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.
Constrained Non Negative Matrix Factorization (Cnmf E) Pipeline, supplied by Inscopix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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consensus hierarchical and non-negative matrix factorization (nmf) clustering  (Broad Institute Inc)
90
Broad Institute Inc consensus hierarchical and non-negative matrix factorization (nmf) clustering
(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization <t>(NMF)</t> using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.
Consensus Hierarchical And Non Negative Matrix Factorization (Nmf) Clustering, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/consensus hierarchical and non-negative matrix factorization (nmf) clustering/product/Broad Institute Inc
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non-negative matrix factorization  (NTT Service Evolution Laboratories)
90
NTT Service Evolution Laboratories non-negative matrix factorization
(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization <t>(NMF)</t> using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.
Non Negative Matrix Factorization, supplied by NTT Service Evolution Laboratories, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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iterative non-negative matrix factorization  (AstraZeneca ltd)
90
AstraZeneca ltd iterative non-negative matrix factorization
(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization <t>(NMF)</t> using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.
Iterative Non Negative Matrix Factorization, supplied by AstraZeneca ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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non-negative matrix factorization (snmf)  (Guanhao Biotech Co Ltd)
90
Guanhao Biotech Co Ltd non-negative matrix factorization (snmf)
(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization <t>(NMF)</t> using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.
Non Negative Matrix Factorization (Snmf), supplied by Guanhao Biotech Co Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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non-negative matrix factorization  (National Institute of Standards and Technology)
90
National Institute of Standards and Technology non-negative matrix factorization
(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization <t>(NMF)</t> using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.
Non Negative Matrix Factorization, supplied by National Institute of Standards and Technology, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/non-negative matrix factorization/product/National Institute of Standards and Technology
Average 90 stars, based on 1 article reviews
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Image Search Results


Comparison of pipelines analysis steps

Journal: BMC Genomics

Article Title: RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database

doi: 10.1186/s12864-018-5220-x

Figure Lengend Snippet: Comparison of pipelines analysis steps

Article Snippet: Using the RNA-Seq data from the rat miRNA body atlas, we developed user-friendly query interfaces to dynamically detect TE, TS and organ-specific (OS) miRNAs across three different bioinformatics pipelines (Data-Driven) based on 1) non-negative matrix factorization (NMF) [ ] by Eli Lilly, 2) quasi-Poisson modeling by the National Institute of Environmental Health Sciences (NIEHS) and 3) percentage of total mapped reads by Maastricht University.

Techniques: Comparison, Expressing

(I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization (NMF) using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.

Journal: Cell systems

Article Title: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States

doi: 10.1016/j.cels.2017.08.002

Figure Lengend Snippet: (I) Oncogenic activation signature is generated by experimentally expressing the oncogene of interest in an isogenic cell system. (II) The signature is decomposed using non-negative matrix factorization (NMF) using a reference dataset in order to generate transcriptional components. The components are optionally clustered or sub-selected to represent a specific sample population (e.g., KRAS mutants). (III) Cellular states are defined by clustering and an Onco-GPS map is generated. Samples are then projected onto the Onco-GPS map and further characterized by associating them to diverse genomic features.

Article Snippet: Decompose Signature and Generate Transcriptional Components The oncogenic signature defined above is decomposed using Non-Negative Matrix Factorization (NMF) ( Brunet et al., 2004 ; Tamayo et al., 2007 ) in the Broad-Novartis Cell Line Encyclopedia Reference Dataset (CCLE)( Barretina et al., 2012 ).

Techniques: Activation Assay, Generated, Expressing